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GENETYX CORPORATION atgc sequence assembly software v.3.0
Atgc Sequence Assembly Software V.3.0, supplied by GENETYX CORPORATION, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/sequence+assembly+software+atgc/atgc+sequence+assembly+software/pm40343416-124-18-23
Average 90 stars, based on 1 article reviews
atgc sequence assembly software v.3.0 - by Bioz Stars, 2026-10
90/100 stars

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Related Articles

Sequencing:

Article Title: First record of Triops strenuus Wolf, 1911 (Branchiopoda, Notostraca), a tadpole shrimp of Australian origin, from Japan
Article Snippet: Three species of tadpole shrimp, i.e., Triops granarius (Lucas, 1864), Triops longicaudatus (LeConte, 1846) and Triops cancriformis (Bosc, 1801-1802), have been known from Japan.. In this paper the author describes a fourth Triops species (= Triops strenuus Wolf, 1911) living in the rice paddies of a southern area of Honshu, the largest of the four main islands of Japan.. This species was probably endemic to the Australian continent, and no habitat distribution outside Australia has been reported so far.

Article Title: Development of a novel multiplex digital PCR-based method for the detection of HTLV-1 proviral deletion.
Article Snippet: .. Sequence alignment was confirmed using the sequence assembly software ATGC (GENETYX, Tokyo, Japan). ..

Article Title: Genetic Diversity and Structure of Quercus hondae, a Rare Evergreen Oak Species in Southwestern Japan
Article Snippet: The PCR products were directly sequenced after purification using ExoSAP-IT (Thermo Fisher Scientific, Waltham, MA, USA) by Macrogen Japan Corp. (Tokyo, Japan). .. Sequence chromatograms for sense and antisense strands were verified using the sequence assembly software ATGC (Genetyx, Tokyo, Japan). ..

Article Title: Adapting Genotyping-by-Sequencing for Rice F2 Populations.
Article Snippet: After confirming the presence of a single PCR product using 1.5% agarose gels, Sanger sequencing was performed with either of the PCR primers as a sequencing primer using BigDye Terminator v3.1 Cycle Sequencing Kit (Applied Biosystems) and a 3130xl Genetic Analyzer (Applied Biosystems, Foster City, CA). .. The sequence data, including the raw chromatograms, was analyzed using the sequence assembly software ATGC (Genetyx Corporation, Tokyo, Japan) to identify nucleotides at the SNP positions detected in GBS. ..

Article Title: Demographic History of Shorea curtisii (Dipterocarpaceae) Inferred from Chloroplast DNA Sequence Variations
Article Snippet: We assessed the variability of chloroplast DNA sequences in populations of the dipterocarp forest tree, Shorea curtisii.. This species is widely distributed in hill and coastal hill dipterocarp forests of the Malay Peninsula, whereas isolated populations are found in the coastal hills of north Borneo.. Two chloroplast DNA regions (1555 bp of trnH-psbA-trnK and 925 bp of trnL-trnF) were sequenced from 123 individuals collected from six Malay Peninsula and two Bornean populations.

Article Title: Mutations in Genes Encoding Penicillin-Binding Proteins and Efflux Pumps Play a Role in β-Lactam Resistance in Helicobacter cinaedi
Article Snippet: Sequencing of both strands of purified PCR products was performed using sequencing primers listed in Table S2, a BigDye Terminator v. 3.1 cycle sequencing kit (Applied Biosystems, Foster City, CA), and an Applied Biosystems 3130 genetic analyzer. .. The obtained sequences were assembled and aligned using the sequence assembly software ATGC (Genetyx, Tokyo, Japan) and GENETYX v. 13 (Genetyx). ..

Software:

Article Title: First record of Triops strenuus Wolf, 1911 (Branchiopoda, Notostraca), a tadpole shrimp of Australian origin, from Japan
Article Snippet: Three species of tadpole shrimp, i.e., Triops granarius (Lucas, 1864), Triops longicaudatus (LeConte, 1846) and Triops cancriformis (Bosc, 1801-1802), have been known from Japan.. In this paper the author describes a fourth Triops species (= Triops strenuus Wolf, 1911) living in the rice paddies of a southern area of Honshu, the largest of the four main islands of Japan.. This species was probably endemic to the Australian continent, and no habitat distribution outside Australia has been reported so far.

Article Title: Development of a novel multiplex digital PCR-based method for the detection of HTLV-1 proviral deletion.
Article Snippet: .. Sequence alignment was confirmed using the sequence assembly software ATGC (GENETYX, Tokyo, Japan). ..

Article Title: Genetic Diversity and Structure of Quercus hondae, a Rare Evergreen Oak Species in Southwestern Japan
Article Snippet: The PCR products were directly sequenced after purification using ExoSAP-IT (Thermo Fisher Scientific, Waltham, MA, USA) by Macrogen Japan Corp. (Tokyo, Japan). .. Sequence chromatograms for sense and antisense strands were verified using the sequence assembly software ATGC (Genetyx, Tokyo, Japan). ..

Article Title: Adapting Genotyping-by-Sequencing for Rice F2 Populations.
Article Snippet: After confirming the presence of a single PCR product using 1.5% agarose gels, Sanger sequencing was performed with either of the PCR primers as a sequencing primer using BigDye Terminator v3.1 Cycle Sequencing Kit (Applied Biosystems) and a 3130xl Genetic Analyzer (Applied Biosystems, Foster City, CA). .. The sequence data, including the raw chromatograms, was analyzed using the sequence assembly software ATGC (Genetyx Corporation, Tokyo, Japan) to identify nucleotides at the SNP positions detected in GBS. ..

Article Title: Demographic History of Shorea curtisii (Dipterocarpaceae) Inferred from Chloroplast DNA Sequence Variations
Article Snippet: We assessed the variability of chloroplast DNA sequences in populations of the dipterocarp forest tree, Shorea curtisii.. This species is widely distributed in hill and coastal hill dipterocarp forests of the Malay Peninsula, whereas isolated populations are found in the coastal hills of north Borneo.. Two chloroplast DNA regions (1555 bp of trnH-psbA-trnK and 925 bp of trnL-trnF) were sequenced from 123 individuals collected from six Malay Peninsula and two Bornean populations.

Article Title: Mutations in Genes Encoding Penicillin-Binding Proteins and Efflux Pumps Play a Role in β-Lactam Resistance in Helicobacter cinaedi
Article Snippet: Sequencing of both strands of purified PCR products was performed using sequencing primers listed in Table S2, a BigDye Terminator v. 3.1 cycle sequencing kit (Applied Biosystems, Foster City, CA), and an Applied Biosystems 3130 genetic analyzer. .. The obtained sequences were assembled and aligned using the sequence assembly software ATGC (Genetyx, Tokyo, Japan) and GENETYX v. 13 (Genetyx). ..

Construct:

Article Title: First record of Triops strenuus Wolf, 1911 (Branchiopoda, Notostraca), a tadpole shrimp of Australian origin, from Japan
Article Snippet: Three species of tadpole shrimp, i.e., Triops granarius (Lucas, 1864), Triops longicaudatus (LeConte, 1846) and Triops cancriformis (Bosc, 1801-1802), have been known from Japan.. In this paper the author describes a fourth Triops species (= Triops strenuus Wolf, 1911) living in the rice paddies of a southern area of Honshu, the largest of the four main islands of Japan.. This species was probably endemic to the Australian continent, and no habitat distribution outside Australia has been reported so far.

Polymerase Chain Reaction:

Article Title: Demographic History of Shorea curtisii (Dipterocarpaceae) Inferred from Chloroplast DNA Sequence Variations
Article Snippet: We assessed the variability of chloroplast DNA sequences in populations of the dipterocarp forest tree, Shorea curtisii.. This species is widely distributed in hill and coastal hill dipterocarp forests of the Malay Peninsula, whereas isolated populations are found in the coastal hills of north Borneo.. Two chloroplast DNA regions (1555 bp of trnH-psbA-trnK and 925 bp of trnL-trnF) were sequenced from 123 individuals collected from six Malay Peninsula and two Bornean populations.



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